PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 242aa    MW: 26992.8 Da    PI: 5.5408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C ++F ++  L  H++ H
  XP_009122008.1  94 FSCNYCQRTFYSSQALGGHQNAH 116
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-789121No hitNo description
Gene3DG3DSA:3.30.160.607.2E-492120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.63594121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDASRDEPKP SDSSCIVSTS NTLSLSLEHY NIDAEEDDYD QKPGEEGIKL DLMLAEYDYS  60
QPQLNQELNL IDNLDASVAT PSHKGSTSTE QKLFSCNYCQ RTFYSSQALG GHQNAHKRER  120
TLAKRGKQME AFGHPYGYAP VPFHGQYSNR SLGIQAHSMS HKLSSYNAFG AGEYGQFSWS  180
RTPLVQQPAI GRLSSTIENR HQMMFPPPLT STCENFGRFG AGTIPVDSEE EQQKNLDLSL  240
KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122008.10.0PREDICTED: zinc finger protein 3
RefseqXP_013666116.10.0PREDICTED: zinc finger protein 3-like
SwissprotQ392622e-64ZFP3_ARATH; Zinc finger protein 3
TrEMBLA0A078BYF80.0A0A078BYF8_BRANA; BnaA10g21440D protein
TrEMBLM4CXQ30.0M4CXQ3_BRARP; Uncharacterized protein
STRINGBra009000.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-129C2H2 family protein